5 publications
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A De Novo Designed Metalloenzyme for the Hydration of CO2
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Angew. Chem. Int. Ed. 2014, 53, 7900-7903, 10.1002/anie.201404925
Protein design will ultimately allow for the creation of artificial enzymes with novel functions and unprecedented stability. To test our current mastery of nature’s approach to catalysis, a ZnII metalloenzyme was prepared using de novo design. α3DH3 folds into a stable single‐stranded three‐helix bundle and binds ZnII with high affinity using His3O coordination. The resulting metalloenzyme catalyzes the hydration of CO2 better than any small molecule model of carbonic anhydrase and with an efficiency within 1400‐fold of the fastest carbonic anhydrase isoform, CAII, and 11‐fold of CAIII.
Metal: ZnLigand type: Amino acidHost protein: α3D peptideAnchoring strategy: DativeOptimization: Chemical & geneticNotes: kcat/KM ≈ 3.8*104 M-1*s-1
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An Enantioselective Artificial Metallo-Hydratase
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Chem. Sci. 2013, 4, 3578, 10.1039/c3sc51449h
Direct addition of water to alkenes to generate important chiral alcohols as key motif in a variety of natural products still remains a challenge in organic chemistry. Here, we report the first enantioselective artificial metallo-hydratase, based on the transcription factor LmrR, which catalyses the conjugate addition of water to generate chiral β-hydroxy ketones with enantioselectivities up to 84% ee. A mutagenesis study revealed that an aspartic acid and a phenylalanine located in the active site play a key role in achieving efficient catalysis and high enantioselectivities.
Metal: CuLigand type: PhenanthrolineHost protein: Lactoccal multidrug resistant regulator (LmrR)Anchoring strategy: CovalentOptimization: GeneticNotes: ---
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Cross-Linked Artificial Enzyme Crystals as Heterogeneous Catalysts for Oxidation Reactions
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J. Am. Chem. Soc. 2017, 139, 17994-18002, 10.1021/jacs.7b09343
Designing systems that merge the advantages of heterogeneous catalysis, enzymology, and molecular catalysis represents the next major goal for sustainable chemistry. Cross-linked enzyme crystals display most of these essential assets (well-designed mesoporous support, protein selectivity, and molecular recognition of substrates). Nevertheless, a lack of reaction diversity, particularly in the field of oxidation, remains a constraint for their increased use in the field. Here, thanks to the design of cross-linked artificial nonheme iron oxygenase crystals, we filled this gap by developing biobased heterogeneous catalysts capable of oxidizing carbon–carbon double bonds. First, reductive O2 activation induces selective oxidative cleavage, revealing the indestructible character of the solid catalyst (at least 30 000 turnover numbers without any loss of activity). Second, the use of 2-electron oxidants allows selective and high-efficiency hydroxychlorination with thousands of turnover numbers. This new technology by far outperforms catalysis using the inorganic complexes alone, or even the artificial enzymes in solution. The combination of easy catalyst synthesis, the improvement of “omic” technologies, and automation of protein crystallization makes this strategy a real opportunity for the future of (bio)catalysis.
Metal: FeLigand type: ---Host protein: NikAAnchoring strategy: SupramolecularOptimization: ChemicalNotes: Cross-Linked Enzyme Crystals (CLEC) as catalysts.
Metal: FeLigand type: ---Host protein: NikAAnchoring strategy: SupramolecularOptimization: ChemicalNotes: Cross-Linked Enzyme Crystals (CLEC) as catalysts.
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Hydrolytic Catalysis and Structural Stabilization in a Designed Metalloprotein
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Nat. Chem. 2012, 4, 118-123, 10.1038/NCHEM.1201
Metal ions are an important part of many natural proteins, providing structural, catalytic and electron transfer functions. Reproducing these functions in a designed protein is the ultimate challenge to our understanding of them. Here, we present an artificial metallohydrolase, which has been shown by X-ray crystallography to contain two different metal ions—a Zn(II) ion, which is important for catalytic activity, and a Hg(II) ion, which provides structural stability. This metallohydrolase displays catalytic activity that compares well with several characteristic reactions of natural enzymes. It catalyses p-nitrophenyl acetate (pNPA) hydrolysis with an efficiency only ~100-fold less than that of human carbonic anhydrase (CA)II and at least 550-fold better than comparable synthetic complexes. Similarly, CO2 hydration occurs with an efficiency within ~500-fold of CAII. Although histidine residues in the absence of Zn(II) exhibit pNPA hydrolysis, miniscule apopeptide activity is observed for CO2 hydration. The kinetic and structural analysis of this first de novo designed hydrolytic metalloenzyme reveals necessary design features for future metalloenzymes containing one or more metals.
Ligand type: Amino acidHost protein: TRI peptideAnchoring strategy: DativeOptimization: Chemical & geneticNotes: Zn ion for catalytic activity, Hg ion for structural stability of the ArM. PDB ID 3PBJ = Structure of an analogue.
Ligand type: Amino acidHost protein: TRI peptideAnchoring strategy: DativeOptimization: Chemical & geneticNotes: Zn ion for catalytic activity, Hg ion for structural stability of the ArM, kcat/KM ≈ 1.8*105 M-1*s-1. PDB ID 3PBJ = Structure of an analogue.
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Metal Ion Dependent Binding of Sulphonamide to Carbonic Anhydrase
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Nature 1967, 214, 193-194, 10.1038/214193a0
ACETAZOLAMIDE (2-acetylamino-1,3,4-thiadiazole-5-sulphonamide, ‘Diamox’) is the most potent known inhibitor of the zinc enzyme carbonic anhydrase. This communication reports the direct demonstration that binding of acetazolamide to human carbonic anhydrase requires the presence of a metal ion at the active site and that binding depends on the species of divalent metal ion present. Zinc (II) and cobalt (II) ions are the only ions which induce the formation of very stable acetazolamide carbonic anhydrase complexes and are also the ions which most effectively catalyse the hydration of carbon dioxide and the hydrolysis of p-nitrophenyl acetate. Metal-binding monodentate ions, CN−, HS−, OCN−, and N3−, known as effective carbonic anhydrase inhibitors, compete for the acetazolamide binding site of the zinc enzyme.
Metal: CoLigand type: Amino acidHost protein: Human carbonic anhydraseAnchoring strategy: Metal substitutionOptimization: ---Notes: CO2 hydration
Metal: CoLigand type: Amino acidHost protein: Human carbonic anhydraseAnchoring strategy: Metal substitutionOptimization: ---Notes: Ester cleavage