4 publications
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A Designed Heme-[4Fe-4S] Metalloenzyme Catalyzes Sulfite Reduction like the Native Enzyme
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Science 2018, 361, 1098-1101, 10.1126/science.aat8474
Multielectron redox reactions often require multicofactor metalloenzymes to facilitate coupled electron and proton movement, but it is challenging to design artificial enzymes to catalyze these important reactions, owing to their structural and functional complexity. We report a designed heteronuclear heme-[4Fe-4S] cofactor in cytochrome c peroxidase as a structural and functional model of the enzyme sulfite reductase. The initial model exhibits spectroscopic and ligand-binding properties of the native enzyme, and sulfite reduction activity was improved—through rational tuning of the secondary sphere interactions around the [4Fe-4S] and the substrate-binding sites—to be close to that of the native enzyme. By offering insight into the requirements for a demanding six-electron, seven-proton reaction that has so far eluded synthetic catalysts, this study provides strategies for designing highly functional multicofactor artificial enzymes.
Metal: FeHost protein: Cytochrome c peroxidaseAnchoring strategy: DativeOptimization: Chemical & geneticNotes: Designed heteronuclear heme-[4Fe-4S] cofactor in cytochrome c peroxidase
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An Evolutionary Path to Altered Cofactor Specificity in a Metalloenzyme
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Nat. Commun. 2020, 11, 10.1038/s41467-020-16478-0
AbstractAlmost half of all enzymes utilize a metal cofactor. However, the features that dictate the metal utilized by metalloenzymes are poorly understood, limiting our ability to manipulate these enzymes for industrial and health-associated applications. The ubiquitous iron/manganese superoxide dismutase (SOD) family exemplifies this deficit, as the specific metal used by any family member cannot be predicted. Biochemical, structural and paramagnetic analysis of two evolutionarily related SODs with different metal specificity produced by the pathogenic bacterium Staphylococcus aureus identifies two positions that control metal specificity. These residues make no direct contacts with the metal-coordinating ligands but control the metal’s redox properties, demonstrating that subtle architectural changes can dramatically alter metal utilization. Introducing these mutations into S. aureus alters the ability of the bacterium to resist superoxide stress when metal starved by the host, revealing that small changes in metal-dependent activity can drive the evolution of metalloenzymes with new cofactor specificity.
Ligand type: Amino acidHost protein: Superoxide dismutase (SOD)Anchoring strategy: DativeOptimization: GeneticNotes: PDB: 6EX3, 6EX4, 6EX5, 6QV8, 6QV9
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Design and Evaluation of Artificial Hybrid Photoredox Biocatalysts
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ChemBioChem 2020, 21, 3146-3150, 10.1002/cbic.202000362
A pair of 9-mesityl-10-phenyl acridinium (Mes−Acr+) photoredox catalysts were synthesized with an iodoacetamide handle for cysteine bioconjugation. Covalently tethering of the synthetic Mes−Acr+ cofactors with a small panel of thermostable protein scaffolds resulted in 12 new artificial enzymes. The unique chemical and structural environment of the protein hosts had a measurable effect on the photophysical properties and photocatalytic activity of the cofactors. The constructed Mes−Acr+ hybrid enzymes were found to be active photoinduced electron-transfer catalysts, controllably oxidizing a variety of aryl sulfides when irradiated with visible light, and possessed activities that correlated with the photophysical characterization data. Their catalytic performance was found to depend on multiple factors including the Mes−Acr+ cofactor, the protein scaffold, the location of cofactor immobilization, and the substrate. This work provides a framework toward adapting synthetic photoredox catalysts into artificial cofactors and includes important considerations for future bioengineering efforts.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Aspertate dehydrogenaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Phosphoribosylamine - glycine ligaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Folypolyglutamate synthaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
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Synthesis of a Heterogeneous Artificial Metallolipase with Chimeric Catalytic Activity
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Chem. Commun. 2015, 51, 9324-9327, 10.1039/C5CC02450A
A solid-phase strategy using lipase as a biomolecular scaffold to produce a large amount of Cu2+-metalloenzyme is proposed here. The application of this protocol on different 3D cavities of the enzyme allows creating a heterogeneous artificial metallolipase showing chimeric catalytic activity. The artificial catalyst was assessed in Diels–Alder cycloaddition reactions and cascade reactions showing excellent catalytic properties.
Metal: CuLigand type: PhenanthrolineHost protein: Lipase from G. thermocatenulatus (GTL)Anchoring strategy: CovalentOptimization: GeneticNotes: ArM is immobilized on Sepabeads. Endo/exo = 93.5%
Metal: CuLigand type: PhenanthrolineHost protein: Lipase from G. thermocatenulatus (GTL)Anchoring strategy: CovalentOptimization: GeneticNotes: Cascade reaction: Ester hydrolysis (natural function of the host protein) followed by reduction (function of the designed ArM).