3 publications
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Designer Zinc Finger Proteins: Tools for Creating Artificial DNA-Binding Functional Proteins
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Acc. Chem. Res. 2006, 39, 45-52, 10.1021/ar050158u
The design of artificial functional DNA-binding proteins has long been a goal for several research laboratories. The zinc finger proteins, which typically contain many fingers linked in tandem fashion, are some of the most studied DNA-binding proteins. The zinc finger protein's tandem arrangement and its the ability to recognize a wide variety of DNA sequences make it an attractive framework to design novel DNA-binding peptides/proteins. Our laboratory has utilized several design strategies to create novel zinc finger peptides by re-engineering the C2H2-type zinc finger motif of transcription factor Sp1. Some of the engineered zinc fingers have shown nuclease and catalytic functional properties. Based on these results, we present the design strategies for the creation of novel zinc fingers.
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Highly Malleable Harm-Binding Site of the Haemoprotein HasA Permits Stable Accommodation of Bulky Tetraphenylporphycenes
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RSC Adv. 2019, 9, 18697-18702, 10.1039/c9ra02872b
Iron(III)- and cobalt(III)-9,10,19,20-tetraphenylporphycenes, which possess bulky phenyl groups at the four meso positions of porphycene, were successfully incorporated into the haem acquisition protein HasA secreted by Pseudomonas aeruginosa. Crystal structure analysis revealed that loops surrounding the haem-binding site are highly flexible, remodelling themselves to accommodate bulky metal complexes with significantly different structures from the native haem cofactor.
Ligand type: PorphyceneHost protein: HasAAnchoring strategy: DativeOptimization: Chemical & geneticReaction: ---Max TON: ---ee: ---PDB: ---Notes: ---
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Merging Homogeneous Catalysis with Biocatalysis; Papain as Hydrogenation Catalyst
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Chem. Commun. 2005, 5656, 10.1039/B512138H
Papain, modified at Cys-25 with a monodentate phosphite ligand and complexed with Rh(COD)2BF4, is an active catalyst in the hydrogenation of methyl 2-acetamidoacrylate.
Metal: RhLigand type: PhosphineHost protein: Papain (PAP)Anchoring strategy: CovalentOptimization: ---Notes: ---