3 publications
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Contributions of primary coordination ligands and importance of outer sphere interactions in UFsc, a de novo designed protein with high affinity for metal ions
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J. Inorg. Biochem. 2020, 212, 111224, 10.1016/j.jinorgbio.2020.111224
Metalloproteins constitute nearly half of all proteins and catalyze some of the most complex chemical reactions. Recently, we reported a design of 4G-UFsc (Uno Ferro single chain), a single chain four-helical bundle with extraordinarily high (30 pM) affinity for zinc. We evaluated the contribution of different side chains to binding of Co(II), Ni(II), Zn(II) and Mn(II) using systematic mutagenesis of the amino acids that constitute the primary metal coordination and outer spheres. The binding affinity of proteins for metals was then measured using isothermal titration calorimetry. Our results show that both primary metal coordination environment and side chains in the outer sphere of UFsc are highly sensitive to even slight changes and can be adapted to binding different 3d metals, including hard-to-tightly bind metal ions such as Mn(II). The studies on the origins of tight metal binding will guide future metalloprotein design efforts.
Ligand type: Amino acidHost protein: Uno Ferro single chain (4G-UFsc)Anchoring strategy: DativeOptimization: GeneticReaction: ---Max TON: ---ee: ---PDB: ---Notes: ---
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Design and Evaluation of Artificial Hybrid Photoredox Biocatalysts
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ChemBioChem 2020, 21, 3146-3150, 10.1002/cbic.202000362
A pair of 9-mesityl-10-phenyl acridinium (Mes−Acr+) photoredox catalysts were synthesized with an iodoacetamide handle for cysteine bioconjugation. Covalently tethering of the synthetic Mes−Acr+ cofactors with a small panel of thermostable protein scaffolds resulted in 12 new artificial enzymes. The unique chemical and structural environment of the protein hosts had a measurable effect on the photophysical properties and photocatalytic activity of the cofactors. The constructed Mes−Acr+ hybrid enzymes were found to be active photoinduced electron-transfer catalysts, controllably oxidizing a variety of aryl sulfides when irradiated with visible light, and possessed activities that correlated with the photophysical characterization data. Their catalytic performance was found to depend on multiple factors including the Mes−Acr+ cofactor, the protein scaffold, the location of cofactor immobilization, and the substrate. This work provides a framework toward adapting synthetic photoredox catalysts into artificial cofactors and includes important considerations for future bioengineering efforts.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Aspertate dehydrogenaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Phosphoribosylamine - glycine ligaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
Metal: ---Ligand type: 9-mesityl-10-phenyl acridiniumHost protein: Folypolyglutamate synthaseAnchoring strategy: CovalentOptimization: Chemical & geneticNotes: Maximum conversion is 95%; In most cases, a comparable yield or modest increase in yield was observed for the protein-bound catalyst compared to the unbound cofactor.
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Orthogonal Expression of an Artificial Metalloenzyme for Abiotic Catalysis
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ChemBioChem 2017, 18, 2380-2384, 10.1002/cbic.201700397
Engineering an (Ir)regular cytochrome P450: Mutations within the heme‐binding pocket of a cytochrome P450 enabled the selective incorporation of an artificial Ir‐porphyrin cofactor into the protein, in cells. This orthogonal metalloprotein showed enhanced behavior in unnatural carbene‐mediated cyclopropanation of aliphatic and electron‐deficient olefins.
Metal: IrHost protein: Cytochrome BM3hAnchoring strategy: ReconstitutionOptimization: Chemical & geneticNotes: Reaction of styrene with ethyl diazoacetate, cis:trans = 29:71